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1

A Beginner's Guide to Analysis of RNA-seq Data

Koch, Clarissa M, Chiu, Stephen F, Akbarpour, Mahzad, Bharat, Ankit, Ridge, Karen M, Bartom, Elizabeth T, Winter, Deborah R

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

2

Therapeutic Targeting of MLL Degradation Pathways in MLL-Rearranged Leukemia

Liang, Kaiwei, Volk, Andrew G., Haug, Jeffrey S., Marshall, Stacy A., Woodfin, Ashley R., Bartom, Elizabeth T., Gilmore, Joshua M., Florens, Laurence, Washburn, Michael P., Sullivan, Kelly D., Espinos

Journal:

Year:

2017

Language:

english

File:

PDF, 8.32 MB

english, 2017

3

Regulation of MLL/COMPASS stability through its proteolytic cleavage by taspase1 as a possible approach for clinical therapy of leukemia

Zhao, Zibo, Wang, Lu, Volk, Andrew G., Birch, Noah W., Stoltz, Kristen L., Bartom, Elizabeth T., Marshall, Stacy A., Rendleman, Emily J., Nestler, Carson M., Shilati, Joseph, Schiltz, Gary E., Crispin

Journal:

Genes & Development

Year:

2018

Language:

english

File:

PDF, 4.56 MB

english, 2018

4

Epigenetic repression of the Igk locus by STAT5-mediated recruitment of the histone methyltransferase Ezh2

Mandal, Malay, Powers, Sarah E, Maienschein-Cline, Mark, Bartom, Elizabeth T, Hamel, Keith M, Kee, Barbara L, Dinner, Aaron R, Clark, Marcus R

Journal:

Nature Immunology

Year:

2011

Language:

english

File:

PDF, 898 KB

english, 2011

5

Outcomes including binocularity following surgical correction of the nonaccommodative component in accommodative esotropia

Kurup, Sudhi P., Bartom, Heath W., Myung, Gihyun, Mets, Marilyn B.

Journal:

Journal of American Association for Pediatric Ophthalmology and Strabismus

Year:

2013

Language:

english

File:

PDF, 65 KB

english, 2013

6

Translatome analyses capture of opposing tissue-specific brassinosteroid signals orchestrating root meristem differentiation

Vragović, Kristina, Sela, Ayala, Friedlander-Shani, Lilach, Fridman, Yulia, Hacham, Yael, Holland, Neta, Bartom, Elizabeth, Mockler, Todd C., Savaldi-Goldstein, Sigal

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

7

Genome Sequences of the Primary Endosymbiont "Candidatus Portiera aleyrodidarum" in the Whitefly Bemisia tabaci B and Q Biotypes

Jiang, Z.-F., Xia, F., Johnson, K. W., Bartom, E., Tuteja, J. H., Stevens, R., Grossman, R. L., Brumin, M., White, K. P., Ghanim, M.

Journal:

Journal of Bacteriology

Year:

2012

Language:

english

File:

PDF, 88 KB

english, 2012

8

Comparison of the Genome Sequences of "Candidatus Portiera aleyrodidarum" Primary Endosymbionts of the Whitefly Bemisia tabaci B and Q Biotypes

Jiang, Z.-F., Xia, F., Johnson, K. W., Brown, C. D., Bartom, E., Tuteja, J. H., Stevens, R., Grossman, R. L., Brumin, M., White, K. P., Ghanim, M.

Journal:

Applied and Environmental Microbiology

Year:

2013

Language:

english

File:

PDF, 530 KB

english, 2013

9

GENETIC PATHWAYS LEADING TO THERAPY-RELATED MYELOID NEOPLASMS

Stoddart, Angela, McNerney, Megan E., Bartom, Elizabeth, Bergerson, Rachel, Young, David J., Qian, Zhijian, Wang, Jianghong, Fernald, Anthony A., Davis, Elizabeth M., Larson, Richard A., White, Kevin

Journal:

Mediterranean Journal of Hematology and Infectious Diseases

Year:

2011

Language:

english

File:

PDF, 2.89 MB

english, 2011

10

Regulation of the imprinted Dlk1-Dio3 locus by allele-specific enhancer activity

Luo, Zhuojuan, Lin, Chengqi, Woodfin, Ashley R., Bartom, Elizabeth T., Gao, Xin, Smith, Edwin R., Shilatifard, Ali

Journal:

Genes & Development

Year:

2016

Language:

english

File:

PDF, 1.08 MB

english, 2016

11

Transcriptomic signatures decode Th17 cell pathogenicity

Reyfman, P A, Bartom, E T, Singer, B D

Journal:

Cellular & Molecular Immunology

Year:

2016

Language:

english

File:

PDF, 456 KB

english, 2016

12

CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia

McNerney, M. E., Brown, C. D., Wang, X., Bartom, E. T., Karmakar, S., Bandlamudi, C., Yu, S., Ko, J., Sandall, B. P., Stricker, T., Anastasi, J., Grossman, R. L., Cunningham, J. M., Le Beau, M. M., Wh

Journal:

Year:

2013

Language:

english

File:

PDF, 601 KB

english, 2013

13

Not All H3K4 Methylations Are Created Equal: Mll2/COMPASS Dependency in Primordial Germ Cell Specification

Hu, Deqing, Gao, Xin, Cao, Kaixiang, Morgan, Marc A., Mas, Gloria, Smith, Edwin R., Volk, Andrew G., Bartom, Elizabeth T., Crispino, John D., Di Croce, Luciano, Shilatifard, Ali

Journal:

Year:

2017

Language:

english

File:

PDF, 8.37 MB

english, 2017

14

Retroviral insertional mutagenesis identifies the del(5q) genes, CXXC5, TIFAB and ETF1, as well as the Wnt pathway, as potential targets in del(5q) myeloid neoplasms

Stoddart, A., Qian, Z., Fernald, A. A., Bergerson, R. J., Wang, J., Karrison, T., Anastasi, J., Bartom, E. T., Sarver, A. L., McNerney, M. E., Largaespada, D. A., Le Beau, M. M.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.39 MB

english, 2016

15

Therapeutic targeting of polycomb and BET bromodomain proteins in diffuse intrinsic pontine gliomas

Piunti, Andrea, Hashizume, Rintaro, Morgan, Marc A, Bartom, Elizabeth T, Horbinski, Craig M, Marshall, Stacy A, Rendleman, Emily J, Ma, Quanhong, Takahashi, Yoh-hei, Woodfin, Ashley R, Misharin, Alexa

Journal:

Nature Medicine

Year:

2017

Language:

english

File:

PDF, 3.08 MB

english, 2017

16

SET1A/COMPASS and shadow enhancers in the regulation of homeotic gene expression

Cao, Kaixiang, Collings, Clayton K., Marshall, Stacy A., Morgan, Marc A., Rendleman, Emily J., Wang, Lu, Sze, Christie C., Sun, Tianjiao, Bartom, Elizabeth T., Shilatifard, Ali

Journal:

Genes & Development

Year:

2017

Language:

english

File:

PDF, 1.68 MB

english, 2017

17

EZH2 Regulates the Developmental Timing of Effectors of the Pre-Antigen Receptor Checkpoints

Jacobsen, Jennifer A., Woodard, Jennifer, Mandal, Malay, Clark, Marcus R., Bartom, Elizabeth T., Sigvardsson, Mikael, Kee, Barbara L.

Journal:

The Journal of Immunology

Year:

2017

Language:

english

File:

PDF, 2.87 MB

english, 2017

18

Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation

Calvert, Andrea E., Chalastanis, Alexandra, Wu, Yongfei, Hurley, Lisa A., Kouri, Fotini M., Bi, Yingtao, Kachman, Maureen, May, Jasmine L., Bartom, Elizabeth, Hua, Youjia, Mishra, Rama K., Schiltz, Ga

Journal:

Year:

2017

Language:

english

File:

PDF, 4.00 MB

english, 2017

19

DIPG-24. EPIGENETIC ANALYSIS OF FORMALIN-FIXED PARAFFIN-EMBEDDED PEDIATRIC GLIOMA TISSUE

Huang, Tina, Piunti, Andrea, Hashizume, Rintaro, Bartom, Elizabeth, Qi, Jin, Tomita, Tadanori, James, C. David, Shilatifard, Ali, Saratsis, Amanda

Journal:

Year:

2017

Language:

english

File:

PDF, 60 KB

english, 2017

20

PDTM-28. TARGETED INHIBITION OF EZH2 AND BET BROMODOMAIN PROTEINS FOR THE TREATMENT OF DIFFUSE INTRINSIC PONTINE GLIOMAS

Piunti, Andrea, Morgan, Marc, Bartom, Elizabeth, Louis, Nundia, He, Xingyao, Zhang, Ali, Horbinski, Craig, Marshall, Stacy, Rendleman, Emily, Takahashi, Yoh-hei, Misharin, Alexander, Abshiru, Nebiyu,

Journal:

Year:

2017

Language:

english

File:

PDF, 56 KB

english, 2017

21

PDTM-02. NEXT-GENERATION SEQUENCING OF DIFFUSE INTRINSIC PONTINE GLIOMA CELLS REVEALS ALTERED EPIGENETIC REGULATION AND DISTINCT TUMOR SUBGROUPS

Saratsis, Amanda, Huang, Tina, Bartom, Elizabeth, Marshall, Stacy, Qi, Jin, Hashizume, Rintaro, James, C David, Shilatifard, Ali

Journal:

Year:

2017

Language:

english

File:

PDF, 105 KB

english, 2017

22

ZNF598 Plays Distinct Roles in Interferon-Stimulated Gene Expression and Poxvirus Protein Synthesis

DiGiuseppe, Stephen, Rollins, Madeline G., Bartom, Elizabeth T., Walsh, Derek

Journal:

Year:

2018

Language:

english

File:

PDF, 3.69 MB

english, 2018

23

Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism

Putzbach, William, Gao, Quan Q, Patel, Monal, van Dongen, Stijn, Haluck-Kangas, Ashley, Sarshad, Aishe A, Bartom, Elizabeth T, Kim, Kwang-Youn A, Scholtens, Denise M, Hafner, Markus, Zhao, Jonathan C,

Journal:

Year:

2017

Language:

english

File:

PDF, 4.40 MB

english, 2017

24

A CHAF1B-Dependent Molecular Switch in Hematopoiesis and Leukemia

Crispino, John, Volk, Andrew, Liang, Kaiwei, Ge, Yubin, Bartom, Elizabeth, Malinge, Sebastien, Shilatifard, Ali

Journal:

Experimental Hematology

Year:

2018

Language:

english

File:

PDF, 57 KB

english, 2018

25

6mer seed toxicity in tumor suppressive microRNAs

Gao, Quan Q., Putzbach, William E., Murmann, Andrea E., Chen, Siquan, Sarshad, Aishe A., Peter, Johannes M., Bartom, Elizabeth T., Hafner, Markus, Peter, Marcus E.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 6.16 MB

english, 2018

26

A CHAF1B-Dependent Molecular Switch in Hematopoiesis and Leukemia Pathogenesis

Volk, Andrew, Liang, Kaiwei, Suraneni, Praveen, Li, Xinyu, Zhao, Jianyun, Bulic, Marinka, Marshall, Stacy, Pulakanti, Kirthi, Malinge, Sebastien, Taub, Jeffrey, Ge, Yubin, Rao, Sridhar, Bartom, Elizab

Journal:

Year:

2018

Language:

english

File:

PDF, 7.17 MB

english, 2018

27

Brenner's Encyclopedia of Genetics || Constitutive Expression

Year:

2001

Language:

english

File:

PDF, 34 KB

english, 2001

28

Cutting Edge: Lymphomyeloid-Primed Progenitor Cell Fates Are Controlled by the Transcription Factor Tal1

de Pooter, Renée F., Dias, Sheila, Chowdhury, Munmun, Bartom, Elisabeth T., Okoreeh, Michael K., Sigvardsson, Mikael, Kee, Barbara L.

Journal:

The Journal of Immunology

Year:

2019

File:

PDF, 1.75 MB

2019

29

HGG-10. HISTONE H3G34V MUTATION IS SUFFICIENT TO DRIVE DISTINCT GENOMIC H3K36 METHYLATION PATTERNS IN PEDIATRIC GLIOMA

Huang, Tina, Piunti, Andrea, Ozark, Patrick, Bartom, Elizabeth, Qi, Jin, Hashizume, Rintaro, Shilatifard, Ali, Saratsis, Amanda

Journal:

Year:

2019

Language:

english

File:

PDF, 91 KB

english, 2019

30

Tenascin-C expression contributes to pediatric brainstem glioma tumor phenotype and represents a novel biomarker of disease

Qi, J., Esfahani, D. R., Huang, T., Ozark, P., Bartom, E., Hashizume, R., Bonner, E. R., An, S., Horbinski, C. M., James, C. D., Saratsis, A. M.

Journal:

Acta Neuropathologica Communications

Year:

2019

Language:

english

File:

PDF, 3.71 MB

english, 2019

31

Brenner's Encyclopedia of Genetics || Rolling Circle Replication

Year:

2001

Language:

english

File:

PDF, 46 KB

english, 2001

32

Brenner's Encyclopedia of Genetics || Rolling Circle Replication

Year:

2001

File:

PDF, 46 KB

2001

33

RACK1 evolved species-specific multifunctionality in translational control through sequence plasticity in a loop domain

Rollins, Madeline G., Jha, Sujata, Bartom, Elizabeth T., Walsh, Derek

Journal:

Journal of Cell Science

Year:

2019

File:

PDF, 2.60 MB

2019

34

β-Catenin/Tcf7l2–dependent transcriptional regulation of GLUT1 gene expression by Zic family proteins in colon cancer

Zhao, Zibo, Wang, Lu, Bartom, Elizabeth, Marshall, Stacy, Rendleman, Emily, Ryan, Caila, Shilati, Anthony, Savas, Jeffrey, Chandel, Navdeep, Shilatifard, Ali

Journal:

Science Advances

Year:

2019

File:

PDF, 2.28 MB

2019

35

The Oncogenic Kaposi’s Sarcoma-Associated Herpesvirus Encodes a Mimic of the Tumor-Suppressive miR-15/16 miRNA Family

Morrison, Kylee, Manzano, Mark, Chung, Kevin, Schipma, Matthew J., Bartom, Elizabeth T., Gottwein, Eva

Journal:

Year:

2019

File:

PDF, 2.78 MB

2019

36

Ezh2 Represses Transcription of Innate Lymphoid Genes in B Lymphocyte Progenitors and Maintains the B-2 Cell Fate

Jacobsen, Jennifer A., Bartom, Elizabeth T., Sigvardsson, Mikael, Kee, Barbara L.

Journal:

The Journal of Immunology

Year:

2020

File:

PDF, 2.35 MB

2020

37

ASXL3 bridges BRD4 to BAP1 complex and governs enhancer activity in small cell lung cancer

Szczepanski, Aileen Patricia, Zhao, Zibo, Sosnowski, Tori, Goo, Young Ah, Bartom, Elizabeth Thomas, Wang, Lu

Journal:

Genome Medicine

Year:

2020

File:

PDF, 4.22 MB

2020

38

Role of Hypoxia-Inducible Factors in Regulating Right Ventricular Function and Remodeling during Chronic Hypoxia-Induced Pulmonary Hypertension

Smith, Kimberly A., Waypa, Gregory B., Dudley, V. Joseph, Budinger, G.R. Scott, Abdala-Valencia, Hiam, Bartom, Elizabeth, Schumacker, Paul T

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2020

File:

PDF, 3.58 MB

2020

39

Kaposiâs Sarcoma-Associated Herpesvirus Drives a Super-Enhancer-Mediated Survival Gene Expression Program in Primary Effusion Lymphoma

Manzano, Mark, GÃ¼nther, Thomas, Ju, Hyunwoo, Nicholas, John, Bartom, Elizabeth T., Grundhoff, Adam, Gottwein, Eva, Damania, Blossom

Journal:

Year:

2020

File:

PDF, 3.42 MB

2020

40

[American Thoracic Society American Thoracic Society 2020 International Conference, May 15-20, 2020 - Philadelphia, PA - ()] D70. REVISITING LUNG INFECTION AND INFLAMMATORY AXES - Transcriptional Profiling of Alveolar Macrophages and Pathogens from Bronchoalveolar Lavage of Ventilated Patients with Pneumonia

Winter, D.R., Gadhvi, G., Misharin, A., Singer, B.D., Soulakis, N.D., Kang, M., Donnelly, H., Abdala-Valencia, H., Stoeger, T., Ben Maamar, S., Bartom, E.T., Seed, P.S., Budinger, G.S., Amaral, L.A.N.

File:

PDF, 21 KB

41

Quantitative and multiplexed chemical-genetic phenotyping in mammalian cells with QMAP-Seq

Brockway, Sonia, Wang, Geng, Jackson, Jasen M., Amici, David R., Takagishi, Seesha R., Clutter, Matthew R., Bartom, Elizabeth T., Mendillo, Marc L.

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.88 MB

2020